PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08504g02005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 117aa    MW: 13323.3 Da    PI: 10.5129
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08504g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.41.9e-2840102264
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltg 64 
                               a kk rhski T+ g+Rd R+Rls+++a+++F Lqd LGfdk+skt eWLl ++k a+ e ++
  Niben101Scf08504g02005.1  40 AYKKNRHSKINTAHGPRDQRMRLSLDVARKLFNLQDFLGFDKASKTMEWLLIKSKSAVNEVVR 102
                               789*******************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.5542100IPR017887Transcription factor TCP subgroup
PfamPF036341.9E-3042103IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MAAYSNKDIV ISSTNQDPEE VEIQGIFKNR KGDNKRVAAA YKKNRHSKIN TAHGPRDQRM  60
RLSLDVARKL FNLQDFLGFD KASKTMEWLL IKSKSAVNEV VRGIKAAIEI ENKISNY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787900.18e-54PREDICTED: transcription factor TCP12-like
RefseqXP_016434825.18e-54PREDICTED: transcription factor TCP12-like
SwissprotQ9SBV93e-24CYCLD_ANTMH; Transcription factor CYCLOIDEA (Fragment)
TrEMBLF6KB959e-31F6KB95_SOLTU; BRANCHED1A isoform 2
STRINGSolyc03g119770.2.11e-29(Solanum lycopersicum)
STRINGPGSC0003DMT4000145722e-29(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.27e-24TCP family protein